Pseudomonas aeruginosa PAO1, PA3633 (ygbP)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0051188 obsolete cofactor biosynthetic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0070567 cytidylyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd02516
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0050518 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00108
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0008299 isoprenoid biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00108
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Biosynthesis of cofactors, prosthetic groups and carriers Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00900 Terpenoid backbone biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53448 Nucleotide-diphospho-sugar transferases IPR029044 Nucleotide-diphospho-sugar transferases 10 230 5.18E-55
Gene3D G3DSA:3.90.550.10 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A IPR029044 Nucleotide-diphospho-sugar transferases 5 233 5.5E-69
PANTHER PTHR32125 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE, CHLOROPLASTIC - - 9 231 8.1E-55
CDD cd02516 CDP-ME_synthetase IPR034683 Cytidylyltransferase IspD/TarI 9 228 4.17242E-82
Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 8 232 41.353806
NCBIfam TIGR00453 JCVI: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 10 230 1.7E-75
FunFam G3DSA:3.90.550.10:FF:000003 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase - - 7 232 3.2E-69
Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IPR034683 Cytidylyltransferase IspD/TarI 11 227 2.6E-64

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.