Pseudomonas aeruginosa PAO1, PA3738 (xerD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006259 DNA metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0015074 DNA integration
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02899
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01807
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02899
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009009 site-specific recombinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01807
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.443.10 Intergrase catalytic core IPR013762 Integrase-like, catalytic domain superfamily 112 292 9.3E-58
Gene3D G3DSA:1.10.150.130 - IPR010998 Integrase/recombinase, N-terminal 6 99 1.0E-25
CDD cd00798 INT_XerDC_C - - 116 287 9.12758E-96
NCBIfam TIGR02225 JCVI: site-specific tyrosine recombinase XerD IPR011932 Tyrosine recombinase XerD 11 297 6.3E-119
SUPERFAMILY SSF56349 DNA breaking-rejoining enzymes IPR011010 DNA breaking-rejoining enzyme, catalytic core 8 288 2.21E-59
PANTHER PTHR30629 PROPHAGE INTEGRASE - - 49 282 5.3E-13
Hamap MF_01808 Tyrosine recombinase XerC [xerC]. IPR023009 Tyrosine recombinase XerC/XerD 7 298 57.571285
Pfam PF02899 Phage integrase, N-terminal SAM-like domain IPR004107 Integrase, SAM-like, N-terminal 9 90 3.5E-19
Pfam PF00589 Phage integrase family IPR002104 Integrase, catalytic domain 113 283 5.5E-52
Hamap MF_01807 Tyrosine recombinase XerD [xerD]. IPR011932 Tyrosine recombinase XerD 5 298 65.879898

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.