Pseudomonas aeruginosa PAO1, PA3999 (dacC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0009276 Gram-negative-bacterium-type cell wall
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0004180 carboxypeptidase activity
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 19758330 Reviewed by curator
Biological Process GO:0009252 peptidoglycan biosynthetic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 19758330 Reviewed by curator
Molecular Function GO:0004180 carboxypeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF69189
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009002 serine-type D-Ala-D-Ala carboxypeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00936
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF69189
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Cell wall / LPS / capsule Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Peptideglycan biosynthesis ECO:0000037
not_recorded
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00550 Peptidoglycan biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF07943 Penicillin-binding protein 5, C-terminal domain IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal 276 366 2.1E-24
Pfam PF00768 D-alanyl-D-alanine carboxypeptidase IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal 29 256 7.6E-89
Gene3D G3DSA:3.40.710.10 - IPR012338 Beta-lactamase/transpeptidase-like 24 275 9.2E-100
PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A 63 74 4.3E-18
SUPERFAMILY SSF69189 Penicillin-binding protein associated domain IPR015956 Penicillin-binding protein, C-terminal domain superfamily 276 368 8.04E-25
Gene3D G3DSA:2.60.410.10 - IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily 276 366 8.5E-27
FunFam G3DSA:3.40.710.10:FF:000001 D-alanyl-D-alanine serine-type carboxypeptidase - - 20 275 1.6E-119
PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A 143 156 4.3E-18
SMART SM00936 PBP5_C_2 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal 276 366 1.5E-32
PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A 116 133 4.3E-18
SUPERFAMILY SSF56601 beta-lactamase/transpeptidase-like IPR012338 Beta-lactamase/transpeptidase-like 8 276 3.04E-90
PANTHER PTHR21581 D-ALANYL-D-ALANINE CARBOXYPEPTIDASE - - 32 283 1.7E-46

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.