Pseudomonas aeruginosa PAO1, PA4101 (bfmR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
IDA
Inferred from Direct Assay 		ECO:0000096
electrophoretic mobility shift assay evidence		 25166864 Reviewed by curator
Molecular Function GO:0000156 phosphorelay response regulator activity
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 19936057 Reviewed by curator
Biological Process GO:1900233 positive regulation of single-species biofilm formation on inanimate substrate
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 19936057 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00383
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00383
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Two-component regulatory systems Other PAO1 genes in this class
Transcriptional regulators Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Two-component System ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 6 133 4.41E-40
SMART SM00862 Trans_reg_C_3 IPR001867 OmpR/PhoB-type DNA-binding domain 159 235 2.7E-21
Pfam PF00486 Transcriptional regulatory protein, C terminal IPR001867 OmpR/PhoB-type DNA-binding domain 160 235 2.9E-21
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 7 118 3.1E-30
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 5 117 4.2E-41
Gene3D G3DSA:3.40.50.2300 - - - 6 90 2.2E-20
CDD cd00383 trans_reg_C IPR001867 OmpR/PhoB-type DNA-binding domain 145 235 1.06395E-24
FunFam G3DSA:3.40.50.2300:FF:000001 DNA-binding response regulator PhoB - - 4 85 9.0E-25
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 130 237 3.1E-28
SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators IPR016032 Signal transduction response regulator, C-terminal effector 135 236 7.94E-24
Gene3D G3DSA:6.10.250.690 - - - 91 123 2.5E-19
FunFam G3DSA:1.10.10.10:FF:000099 Two-component system response regulator TorR - - 129 237 2.1E-37
PANTHER PTHR48111 REGULATOR OF RPOS IPR039420 Transcriptional regulatory protein WalR-like 7 236 5.9E-50

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.