Pseudomonas aeruginosa PAO1, PA4227 (pchR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 220 296 3.0E-21
Gene3D G3DSA:1.10.10.60 - - - 194 248 6.7E-9
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 250 296 3.05E-9
Gene3D G3DSA:1.10.10.60 - - - 249 296 7.6E-15
PANTHER PTHR47893 REGULATORY PROTEIN PCHR - - 2 296 4.2E-75
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 214 296 2.6E-30
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 198 248 5.29E-8

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.