Pseudomonas aeruginosa PAO1, PA4363 (iciA)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0043565	sequence-specific DNA binding	IDA Inferred from Direct Assay	ECO:0001807	26967762	Reviewed by curator
Biological Process	GO:0006259	DNA metabolic process	ISS Inferred from Sequence or Structural Similarity	ECO:0000044 sequence similarity evidence
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00039	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00039	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family	IPR000847	Transcription regulator HTH, LysR	7	64	3.5E-16
Gene3D	G3DSA:1.10.10.10	-	IPR036388	Winged helix-like DNA-binding domain superfamily	3	78	5.0E-21
PRINTS	PR00039	LysR bacterial regulatory protein HTH signature	IPR000847	Transcription regulator HTH, LysR	42	53	2.0E-6
SUPERFAMILY	SSF53850	Periplasmic binding protein-like II	-	-	86	291	2.71E-22
Gene3D	G3DSA:3.40.190.290	-	-	-	79	298	5.5E-69
NCBIfam	TIGR03298	JCVI: ArgP/LysG family DNA-binding transcriptional regulator	IPR017685	HTH-type transcriptional regulator ArgP	4	292	1.4E-112
Pfam	PF03466	LysR substrate binding domain	IPR005119	LysR, substrate-binding	92	279	1.3E-14
PANTHER	PTHR30579	TRANSCRIPTIONAL REGULATOR	-	-	1	293	7.5E-80
Hamap	MF_00513	HTH-type transcriptional regulator ArgP [argP].	IPR023490	HTH-type transcriptional regulator ArgP, gammaproteobacteria	1	297	57.250862
PRINTS	PR00039	LysR bacterial regulatory protein HTH signature	IPR000847	Transcription regulator HTH, LysR	32	42	2.0E-6
SUPERFAMILY	SSF46785	Winged helix DNA-binding domain	IPR036390	Winged helix DNA-binding domain superfamily	3	112	3.4E-18
FunFam	G3DSA:1.10.10.10:FF:000061	HTH-type transcriptional regulator ArgP	-	-	3	78	3.1E-35
PRINTS	PR00039	LysR bacterial regulatory protein HTH signature	IPR000847	Transcription regulator HTH, LysR	21	32	2.0E-6

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.