Pseudomonas aeruginosa PAO1, PA4381 (colR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0071236 cellular response to antibiotic
IGI
Inferred from Genetic Interaction 		ECO:0000316
genetic interaction evidence used in manual assertion		 23459479 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00486
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00486
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00486
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class
Two-component regulatory systems Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Two-component System ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR48111 REGULATOR OF RPOS IPR039420 Transcriptional regulatory protein WalR-like 1 223 1.8E-55
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 3 113 7.4E-30
SMART SM00862 Trans_reg_C_3 IPR001867 OmpR/PhoB-type DNA-binding domain 146 220 2.0E-18
FunFam G3DSA:3.40.50.2300:FF:000001 DNA-binding response regulator PhoB - - 1 81 3.2E-28
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1 173 2.7E-43
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1 113 4.5E-46
Gene3D G3DSA:3.40.50.2300 - - - 1 81 1.0E-22
CDD cd00383 trans_reg_C IPR001867 OmpR/PhoB-type DNA-binding domain 133 220 5.07746E-23
Pfam PF00486 Transcriptional regulatory protein, C terminal IPR001867 OmpR/PhoB-type DNA-binding domain 146 220 5.7E-18
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 119 225 4.0E-23
FunFam G3DSA:1.10.10.10:FF:000058 DNA-binding response OmpR family regulator - - 118 224 2.9E-50
CDD cd17574 REC_OmpR - - 4 103 3.28964E-51
Gene3D G3DSA:6.10.250.690 - - - 82 118 1.6E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.