Pseudomonas aeruginosa PAO1, PA4457

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0097367 carbohydrate derivative binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF53697
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0005975 carbohydrate metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF004692
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016853 isomerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF004692
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:1901135 carbohydrate derivative metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF53697
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Secreted Factors (toxins, enzymes, alginate) Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae00540 Lipopolysaccharide biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00393 JCVI: KpsF/GutQ family sugar-phosphate isomerase IPR004800 Phosphosugar isomerase, KdsD/KpsF-type 47 316 5.6E-113
SMART SM00116 cbs_1 IPR000644 CBS domain 277 325 0.02
SUPERFAMILY SSF53697 SIS domain IPR046348 SIS domain superfamily 11 324 1.69E-69
PIRSF PIRSF004692 KdsD_KpsF IPR004800 Phosphosugar isomerase, KdsD/KpsF-type 1 326 0.0
Gene3D G3DSA:3.40.50.10490 - - - 5 198 6.6E-67
FunFam G3DSA:3.40.50.10490:FF:000011 Arabinose 5-phosphate isomerase - - 7 197 5.8E-87
Pfam PF00571 CBS domain IPR000644 CBS domain 219 260 1.1E-4
SMART SM00116 cbs_1 IPR000644 CBS domain 212 260 3.0
CDD cd04604 CBS_pair_SIS_assoc - - 199 322 2.33601E-64
Gene3D G3DSA:3.10.580.10 - IPR046342 CBS domain superfamily 199 323 1.6E-46
Pfam PF01380 SIS domain IPR001347 SIS domain 43 174 5.0E-32
PANTHER PTHR42745 - - - 1 326 0.0
Pfam PF00571 CBS domain IPR000644 CBS domain 279 323 6.5E-7
FunFam G3DSA:3.10.580.10:FF:000007 Arabinose 5-phosphate isomerase - - 199 323 1.8E-48
CDD cd05014 SIS_Kpsf IPR035474 KpsF-like, SIS domain 47 174 5.41839E-75

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.