Pseudomonas aeruginosa PAO1, PA4461 (lptB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015921 lipopolysaccharide export
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:P0A9V1
 ECO:0000250
sequence similarity evidence used in manual assertion		 17056748 Reviewed by curator
Molecular Function GO:0042626 ATPase-coupled transmembrane transporter activity
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: UniProtKB:P0A9V1
 ECO:0000250
sequence similarity evidence used in manual assertion		 24639492 Reviewed by curator
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00005
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03218
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0043190 ATP-binding cassette (ABC) transporter complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03218
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transport of small molecules Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 4 235 1.93E-61
NCBIfam TIGR04406 JCVI: LPS export ABC transporter ATP-binding protein IPR030921 LPS export ABC transporter, ATP-binding protein LptB 3 241 1.2E-121
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 240 6.6E-71
Pfam PF00005 ABC transporter IPR003439 ABC transporter-like, ATP-binding domain 20 166 3.8E-33
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 28 213 6.3E-8
PANTHER PTHR45772 CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED - - 1 240 9.1E-102
CDD cd03218 ABC_YhbG IPR030921 LPS export ABC transporter, ATP-binding protein LptB 4 236 0.0
FunFam G3DSA:3.40.50.300:FF:000151 Lipopolysaccharide ABC transporter ATP-binding protein - - 1 241 9.5E-123
Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal 214 239 2.1E-6

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.