Pseudomonas aeruginosa PAO1, PA4581 (rtcR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF037354
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF037354
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF06956 Regulator of RNA terminal phosphate cyclase IPR009715 Regulator of RNA terminal phosphate cyclase 2 188 6.8E-86
Gene3D G3DSA:1.10.8.60 - - - 366 446 1.6E-12
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 210 356 3.0E-11
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 157 524 1.4E-77
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 190 358 1.1E-49
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 175 364 2.9E-49
FunFam G3DSA:3.40.50.300:FF:001653 Transcriptional regulator RtcR - - 175 364 4.1E-101
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 190 441 3.11E-50
PIRSF PIRSF037354 RtcR IPR017183 Sigma54-dependent transcriptional activator, RtcR 1 531 0.0
CDD cd00009 AAA - - 203 356 4.7244E-19
NCBIfam NF038308 NCBIFAM: RNA repair transcriptional activator RtcR IPR017183 Sigma54-dependent transcriptional activator, RtcR 1 530 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.