Pseudomonas aeruginosa PAO1, PA4671

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01386
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008097 5S rRNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00731
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01386
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01386
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Adaptation, Protection Other PAO1 genes in this class
Translation, post-translational modification, degradation Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00731 JCVI: 50S ribosomal protein L25 IPR001021 Ribosomal protein bL25, long-form 6 175 7.1E-45
Pfam PF01386 Ribosomal L25p family IPR029751 Large ribosomal subunit protein bL25, L25 domain 6 94 9.5E-27
FunFam G3DSA:2.40.240.10:FF:000022 50S ribosomal protein L25 - - 2 97 1.2E-62
PANTHER PTHR33284 RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN - - 4 191 1.1E-42
Pfam PF14693 Ribosomal protein TL5, C-terminal domain IPR020057 Large ribosomal subunit protein bL25, beta domain 102 191 2.7E-28
Hamap MF_01334 50S ribosomal protein L25 [rplY]. IPR001021 Ribosomal protein bL25, long-form 4 188 30.687246
Gene3D G3DSA:2.170.120.20 Ribosomal protein L25, beta domain IPR037121 Large ribosomal subunit protein bL25, C-terminal 99 196 4.8E-28
FunFam G3DSA:2.170.120.20:FF:000007 50S ribosomal protein L25 - - 99 196 2.5E-63
CDD cd00495 Ribosomal_L25_TL5_CTC IPR029751 Large ribosomal subunit protein bL25, L25 domain 5 96 4.54583E-37
Gene3D G3DSA:2.40.240.10 Ribosomal Protein L25; Chain P IPR020056 Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal 2 97 8.1E-27
SUPERFAMILY SSF50715 Ribosomal protein L25-like IPR011035 Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily 4 196 1.73E-55

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.