Pseudomonas aeruginosa PAO1, PA4742 (truB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0016070 RNA metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0044267 cellular protein metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01509
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PAO1 genes in this class
Translation, post-translational modification, degradation Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF88697 PUA domain-like IPR015947 PUA-like superfamily 245 303 4.97E-14
Gene3D G3DSA:3.30.2350.10 Pseudouridine synthase - - 2 242 1.9E-92
CDD cd02573 PseudoU_synth_EcTruB IPR014780 tRNA pseudouridine synthase II, TruB 13 220 1.27909E-129
CDD cd21152 PUA_TruB_bacterial - - 243 302 1.11556E-22
FunFam G3DSA:3.30.2350.10:FF:000003 tRNA pseudouridine synthase B - - 1 243 7.2E-115
PANTHER PTHR13767 TRNA-PSEUDOURIDINE SYNTHASE IPR014780 tRNA pseudouridine synthase II, TruB 8 226 6.0E-77
Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) IPR002501 Pseudouridine synthase II, N-terminal 33 180 5.0E-57
Gene3D G3DSA:2.30.130.10 PUA domain IPR036974 PUA domain superfamily 244 304 9.6E-23
Hamap MF_01080 tRNA pseudouridine synthase B [truB]. IPR014780 tRNA pseudouridine synthase II, TruB 11 302 19.340933
FunFam G3DSA:2.30.130.10:FF:000012 tRNA pseudouridine synthase B - - 244 304 4.3E-40
Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain IPR032819 tRNA pseudouridylate synthase B, C-terminal 181 242 5.5E-20
Pfam PF09157 Pseudouridine synthase II TruB, C-terminal IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal 246 302 1.7E-20
SUPERFAMILY SSF55120 Pseudouridine synthase IPR020103 Pseudouridine synthase, catalytic domain superfamily 11 241 4.03E-84
NCBIfam TIGR00431 JCVI: tRNA pseudouridine(55) synthase TruB IPR014780 tRNA pseudouridine synthase II, TruB 12 219 5.8E-80

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.