Pseudomonas aeruginosa PAO1, PA4856 (retS)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| VqsM binding site | 5451961 | 5451975 | - |
ECO:0000314
direct assay evidence used in manual assertion |
24612375 | Details |
| Shine-Dalgarno sequence | 5452140 | 5452142 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CGGCGGATAAC-N66-GTTATCCGCCG | 5455019 | 5455106 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GTTATCCGCCG-N18-CGGCGGATAAC | 5455096 | 5455135 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: CGGCGGATAAC-N66-GTTATCCGCCG | 5455125 | 5455212 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GTTATCCGCCG-N18-CGGCGGATAAC | 5455202 | 5455241 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: CGGCGGATAAC-N66-GTTATCCGCCG | 5455231 | 5455318 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Shine-Dalgarno sequence | 5455422 | 5455424 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |