Pseudomonas aeruginosa PAO1, PA5262 (fimS)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Vfr binding site | 5924442 | 5924463 | - |
ECO:0000314
direct assay evidence used in manual assertion |
17159200 | Details |
| Shine-Dalgarno sequence | 5924382 | 5924384 | - |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details | |
| Shine-Dalgarno sequence | 5924588 | 5924590 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| transcriptional initiation site (+1) | 5923362 | 5923362 | - |
|
Details | |
| AlgU binding site | 5923362 | 5923397 | - |
|
Details | |
| algR promoter | 5923358 | 5923406 | - |
|
7961422 | Details |
| P1 algR | 5923358 | 5923407 | - |
|
Details | |
| promoter at algR1 | 5923358 | 5923407 | - |
|
2510718 | Details |
| promoter at algR | 5923359 | 5923408 | - |
|
2140147 | Details |
| deleted fragment at algR | 5923343 | 5923443 | - |
|
2140147 | Details |
| AlgU binding site | 5923363 | 5923398 | - |
|
Details | |
| AlgU binding site | 5923363 | 5923398 | - |
|
11807066 | Details |