Pseudomonas aeruginosa PAO1, PA5308 (lrp)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 10216857 Reviewed by curator
Biological Process GO:0006524 alanine catabolic process
IMP
Inferred from Mutant Phenotype 		ECO:0000015
mutant phenotype evidence		 19666712 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 10216857 Reviewed by curator
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00033
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Central intermediary metabolism Other PAO1 genes in this class
Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF54909 Dimeric alpha+beta barrel IPR011008 Dimeric alpha-beta barrel 73 159 3.35E-20
PANTHER PTHR30154 LEUCINE-RESPONSIVE REGULATORY PROTEIN - - 9 156 2.7E-40
Gene3D G3DSA:3.30.70.920 - - - 65 148 1.6E-22
SMART SM00344 asnc IPR019888 Transcription regulator AsnC-like 11 120 5.9E-48
FunFam G3DSA:3.30.70.920:FF:000001 Transcriptional regulator, AsnC family - - 64 148 4.6E-46
PRINTS PR00033 AsnC bacterial regulatory protein HTH signature IPR000485 AsnC-type HTH domain 27 38 3.3E-20
FunFam G3DSA:1.10.10.10:FF:000235 AsnC family transcriptional regulator - - 1 62 4.2E-37
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 10 69 1.56E-18
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 64 3.8E-23
CDD cd00090 HTH_ARSR IPR011991 ArsR-like helix-turn-helix domain 12 57 1.01894E-6
PRINTS PR00033 AsnC bacterial regulatory protein HTH signature IPR000485 AsnC-type HTH domain 11 27 3.3E-20
Pfam PF01037 Lrp/AsnC ligand binding domain IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain 77 151 3.0E-20
Pfam PF13412 Winged helix-turn-helix DNA-binding - - 11 57 1.7E-19
PRINTS PR00033 AsnC bacterial regulatory protein HTH signature IPR000485 AsnC-type HTH domain 38 57 3.3E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.