Pseudomonas aeruginosa PAO1, PA5328 (sphB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0051872 sphingosine catabolic process
IDA
Inferred from Direct Assay 		ECO:0000096
electrophoretic mobility shift assay evidence		 24465209 Reviewed by curator
Biological Process GO:0051872 sphingosine catabolic process
IDA
Inferred from Direct Assay 		ECO:0000096
electrophoretic mobility shift assay evidence
Molecular Function GO:0020037 heme binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46626
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009055 electron transfer activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46626
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005506 iron ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00607
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Energy metabolism Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.760.10 - IPR036909 Cytochrome c-like domain superfamily 50 127 2.5E-28
PANTHER PTHR40942 - IPR002323 Cytochrome c, class IE 14 125 2.8E-34
PRINTS PR00607 Class IE cytochrome C signature IPR002323 Cytochrome c, class IE 59 70 6.1E-7
PRINTS PR00607 Class IE cytochrome C signature IPR002323 Cytochrome c, class IE 98 110 6.1E-7
PRINTS PR00607 Class IE cytochrome C signature IPR002323 Cytochrome c, class IE 70 80 6.1E-7
FunFam G3DSA:1.10.760.10:FF:000029 Cytochrome c5 - - 49 126 2.3E-45
Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III IPR009056 Cytochrome c-like domain 52 123 1.0E-13
SUPERFAMILY SSF46626 Cytochrome c IPR036909 Cytochrome c-like domain superfamily 54 124 2.85E-16
PRINTS PR00607 Class IE cytochrome C signature IPR002323 Cytochrome c, class IE 113 124 6.1E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.