Pseudomonas aeruginosa PAO1, PA5377 (cbcW)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0031460	glycine betaine transport	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	19919675	Reviewed by curator
Cellular Component	GO:1902495	transmembrane transporter complex	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	19919675	Reviewed by curator
Biological Process	GO:0031460	glycine betaine transport	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	21478341	Reviewed by curator
Molecular Function	GO:0015226	carnitine transmembrane transporter activity	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	19919675	Reviewed by curator
Cellular Component	GO:0043190	ATP-binding cassette (ABC) transporter complex	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	19919675	Reviewed by curator
Biological Process	GO:1902603	carnitine transmembrane transport	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	21478341	Reviewed by curator
Molecular Function	GO:0005275	amine transmembrane transporter activity	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	19919675	Reviewed by curator
Molecular Function	GO:1901682	sulfur compound transmembrane transporter activity	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	23763788	Reviewed by curator
Biological Process	GO:0015871	choline transport	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	19919675	Reviewed by curator
Biological Process	GO:0042426	choline catabolic process	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	21478341	Reviewed by curator
Biological Process	GO:0031457	glycine betaine catabolic process	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	19919675	Reviewed by curator
Biological Process	GO:0015838	amino-acid betaine transport	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	19919675	Reviewed by curator
Biological Process	GO:0042426	choline catabolic process	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	19919675	Reviewed by curator
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:cd06261	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0055085	transmembrane transport	ISM Inferred from Sequence Model Term mapped from: InterPro:cd06261	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Membrane proteins Other PAO1 genes in this class Transport of small molecules Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pae02010	ABC transporters	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
NCBIfam	TIGR03416	JCVI: choline ABC transporter permease subunit	IPR017784	ABC transporter, choline, permease protein	5	271	1.1E-125
FunFam	G3DSA:1.10.3720.10:FF:000001	Glycine betaine ABC transporter, permease	-	-	85	277	6.4E-66
SUPERFAMILY	SSF161098	MetI-like	IPR035906	MetI-like superfamily	87	271	5.89E-39
CDD	cd06261	TM_PBP2	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	95	257	1.54646E-15
PANTHER	PTHR47737	GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM PERMEASE PROTEIN PROW	-	-	1	275	6.0E-100
Gene3D	G3DSA:1.10.3720.10	-	IPR035906	MetI-like superfamily	86	273	8.7E-34
Pfam	PF00528	Binding-protein-dependent transport system inner membrane component	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	110	267	1.1E-27

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.