Pseudomonas aeruginosa PAO1, PA5380 (gbdR)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0031457	glycine betaine catabolic process	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	17951379	Reviewed by curator
Biological Process	GO:0010922	positive regulation of phosphatase activity	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	19103776	Reviewed by curator
Biological Process	GO:0006355	regulation of transcription, DNA-templated	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	24097953	Reviewed by curator
Biological Process	GO:0045764	positive regulation of cellular amino acid metabolic process	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	17951379	Reviewed by curator
Biological Process	GO:0045764	positive regulation of cellular amino acid metabolic process	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	17951379	Reviewed by curator
Biological Process	GO:0010922	positive regulation of phosphatase activity	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	19103776	Reviewed by curator
Biological Process	GO:0009896	positive regulation of catabolic process	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	17951379	Reviewed by curator
Biological Process	GO:0010518	positive regulation of phospholipase activity	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	19103776	Reviewed by curator
Biological Process	GO:0006355	regulation of transcription, DNA-templated	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	17951379	Reviewed by curator
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00342	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00342	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0043565	sequence-specific DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00342	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
PseudoCAP		glycine betaine catabolism		ECO:0000037 not_recorded

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SMART	SM00342	aracneu4	IPR018060	DNA binding HTH domain, AraC-type	240	323	9.5E-29
FunFam	G3DSA:1.10.10.60:FF:000090	Transcriptional regulator ArgR, AraC family	-	-	220	325	2.2E-58
SUPERFAMILY	SSF46689	Homeodomain-like	IPR009057	Homeobox-like domain superfamily	224	274	2.15E-9
Pfam	PF12833	Helix-turn-helix domain	IPR018060	DNA binding HTH domain, AraC-type	246	324	1.2E-22
Gene3D	G3DSA:1.10.10.60	-	-	-	220	326	4.7E-30
SUPERFAMILY	SSF52317	Class I glutamine amidotransferase-like	IPR029062	Class I glutamine amidotransferase-like	15	205	4.07E-48
SUPERFAMILY	SSF46689	Homeodomain-like	IPR009057	Homeobox-like domain superfamily	276	325	8.06E-12
Pfam	PF01965	DJ-1/PfpI family	IPR002818	DJ-1/PfpI	20	183	2.8E-17
PANTHER	PTHR43130	ARAC-FAMILY TRANSCRIPTIONAL REGULATOR	-	-	13	263	5.8E-49
FunFam	G3DSA:3.40.50.880:FF:000061	AraC family transcriptional regulator	-	-	12	213	0.0
CDD	cd03136	GATase1_AraC_ArgR_like	-	-	18	202	5.86732E-97
Gene3D	G3DSA:3.40.50.880	-	IPR029062	Class I glutamine amidotransferase-like	12	213	5.1E-58

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.