Pseudomonas aeruginosa PAO1, PA5389 (cdhR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 19406895 Reviewed by curator
Biological Process GO:0009896 positive regulation of catabolic process
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 19406895 Reviewed by curator
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.10.60:FF:000090 Transcriptional regulator ArgR, AraC family - - 206 311 2.6E-46
Pfam PF01965 DJ-1/PfpI family IPR002818 DJ-1/PfpI 19 171 8.2E-14
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 232 309 7.4E-22
Gene3D G3DSA:3.40.50.880 - IPR029062 Class I glutamine amidotransferase-like 2 199 3.7E-57
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 226 309 4.4E-26
PANTHER PTHR43130 ARAC-FAMILY TRANSCRIPTIONAL REGULATOR - - 4 248 2.8E-42
SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like IPR029062 Class I glutamine amidotransferase-like 5 190 1.67E-46
MobiDBLite mobidb-lite consensus disorder prediction - - 305 336 -
CDD cd03136 GATase1_AraC_ArgR_like - - 5 188 7.77437E-91
Gene3D G3DSA:1.10.10.60 - - - 200 311 3.0E-25
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 262 310 8.51E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.