Pseudomonas fluorescens Pf0-1, Pfl01_1789 (gcbB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:1900192 positive regulation of single-species biofilm formation
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 21764921 Reviewed by curator
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 636 788 7.1E-43
Gene3D G3DSA:3.30.450.20 PAS domain - - 511 621 3.2E-18
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 375 500 1.52E-18
CDD cd00130 PAS IPR000014 PAS domain 374 490 3.87119E-9
Pfam PF13426 PAS domain IPR000014 PAS domain 375 492 2.2E-11
Pfam PF08447 PAS fold IPR013655 PAS fold-3 531 604 1.1E-10
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 640 790 7.77E-46
SMART SM00267 duf1_3 IPR000160 GGDEF domain 624 792 3.5E-61
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 372 500 6.7E-14
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 622 792 2.8E-54
Pfam PF03924 CHASE domain IPR006189 CHASE domain 88 269 7.2E-32
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 632 790 3.6E-45
CDD cd01949 GGDEF IPR000160 GGDEF domain 637 789 2.61386E-59
SMART SM01079 CHASE_2 IPR006189 CHASE domain 85 271 7.3E-46
Gene3D G3DSA:3.30.450.20 PAS domain - - 353 510 2.2E-25
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 630 792 1.8E-48
PANTHER PTHR45138 REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM - - 335 791 2.0E-66
SMART SM00086 pac_2 IPR001610 PAC motif 451 493 1.0E-5
SMART SM00086 pac_2 IPR001610 PAC motif 583 624 8.6
CDD cd00130 PAS IPR000014 PAS domain 526 621 1.48178E-6
Gene3D G3DSA:3.30.450.350 CHASE domain IPR042240 CHASE domain superfamily 89 298 1.0E-30
SMART SM00091 pas_2 IPR000014 PAS domain 362 431 2.4E-4
SMART SM00091 pas_2 IPR000014 PAS domain 509 577 54.0
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 490 622 4.54E-13

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.