Pseudomonas aeruginosa UCBPP-PA14, PA14_03720

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Two-component regulatory systems Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 211 318 2.09E-29
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 336 492 1.57E-48
CDD cd01949 GGDEF IPR000160 GGDEF domain 332 489 1.15597E-62
SMART SM00086 pac_2 IPR001610 PAC motif 156 198 8.7E-10
CDD cd00130 PAS IPR000014 PAS domain 92 195 6.31723E-11
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 502 752 8.1E-93
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 502 752 1.6E-101
Pfam PF00989 PAS fold IPR013767 PAS fold 209 316 1.4E-15
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 326 492 3.9E-40
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 202 748 0.0
SMART SM00267 duf1_3 IPR000160 GGDEF domain 320 491 4.0E-61
Gene3D G3DSA:3.30.450.20 PAS domain - - 74 194 3.0E-36
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 331 486 7.6E-46
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 209 327 5.8E-21
CDD cd01948 EAL IPR001633 EAL domain 507 747 9.91073E-115
SMART SM00091 pas_2 IPR000014 PAS domain 81 149 6.1E-6
Pfam PF08447 PAS fold IPR013655 PAS fold-3 104 192 1.5E-21
SMART SM00086 pac_2 IPR001610 PAC motif 278 320 3.8E-5
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 327 489 6.5E-40
CDD cd00130 PAS IPR000014 PAS domain 215 317 9.99915E-13
Gene3D G3DSA:3.30.450.20 PAS domain - - 199 324 6.6E-37
Pfam PF00563 EAL domain IPR001633 EAL domain 507 742 5.7E-75
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 79 197 4.3E-11
SMART SM00091 pas_2 IPR000014 PAS domain 206 272 3.4E-9
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 87 199 3.32E-21
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 325 493 2.1E-55
SMART SM00052 duf2_2 IPR001633 EAL domain 501 747 3.8E-121
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 506 749 2.88E-88

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.