Pseudomonas aeruginosa UCBPP-PA14, PA14_09570

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.10 - - - 168 258 2.5E-28
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 88 4.2E-25
Coils Coil Coil - - 22 42 -
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 18 29 8.8E-7
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 29 39 8.8E-7
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 39 50 8.8E-7
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 1 84 9.5E-22
CDD cd08442 PBP2_YofA_SoxR_like - - 90 279 2.7287E-74
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 85 281 1.6E-36
PANTHER PTHR30126 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 1 281 2.2E-73
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 4 61 1.3E-18
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 1 109 7.37E-22
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 86 281 4.07E-30
Gene3D G3DSA:3.40.190.10 - - - 89 272 2.5E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.