Pseudomonas aeruginosa UCBPP-PA14, PA14_17140

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR42837
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00228
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004222 metalloendopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR42837
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02163
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Membrane proteins Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00989 PDZ_metalloprotease - - 211 287 1.37407E-23
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 125 220 1.7E-25
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 208 290 2.23E-16
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 87 186 7.62E-15
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 224 436 2.0E-60
SMART SM00228 pdz_new IPR001478 PDZ domain 211 280 4.2E-8
SMART SM00228 pdz_new IPR001478 PDZ domain 114 186 1.5E-5
PANTHER PTHR42837 REGULATOR OF SIGMA-E PROTEASE RSEP IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase 216 450 9.2E-113
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 221 306 1.1E-18
Pfam PF13180 PDZ domain IPR001478 PDZ domain 225 289 1.0E-10
Pfam PF17820 PDZ domain IPR041489 PDZ domain 6 129 161 2.8E-7
CDD cd00989 PDZ_metalloprotease - - 111 195 4.35988E-14
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 10 193 1.4E-58
CDD cd06163 S2P-M50_PDZ_RseP-like - - 7 121 2.92379E-49
NCBIfam TIGR00054 JCVI: RIP metalloprotease RseP IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase 2 450 1.4E-123
CDD cd06163 S2P-M50_PDZ_RseP-like - - 379 449 2.91794E-31

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.