Pseudomonas aeruginosa UCBPP-PA14, PA14_17380 (gfnR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 69 89 -
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 3 89 6.6E-23
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 1 85 1.5E-24
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 4 290 9.0E-86
FunFam G3DSA:3.40.190.290:FF:000001 Transcriptional regulator, LysR family - - 88 287 4.7E-70
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 4 111 1.28E-22
Gene3D G3DSA:3.40.190.290 - - - 90 286 4.7E-67
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 9 63 8.7E-20
CDD cd08470 PBP2_CrgA_like_1 - - 92 288 1.45316E-130
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 88 288 1.1E-46
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 89 291 1.77E-48

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.