Pseudomonas aeruginosa UCBPP-PA14, PA14_17790

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 1 80 2.42E-22
PANTHER PTHR30346 TRANSCRIPTIONAL DUAL REGULATOR HCAR-RELATED - - 1 293 2.1E-83
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 18 29 1.2E-8
Gene3D G3DSA:3.40.190.10 - - - 162 267 5.4E-62
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 39 50 1.2E-8
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 3 62 9.9E-21
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 85 1.1E-26
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 87 291 5.3E-47
Gene3D G3DSA:3.40.190.10 - - - 88 285 5.4E-62
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 88 293 2.31E-42
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 1 84 1.3E-26
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 29 39 1.2E-8
CDD cd08448 PBP2_LTTR_aromatics_like_2 - - 92 288 1.35193E-108

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.