Pseudomonas aeruginosa UCBPP-PA14, PA14_17900 (metR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:2000147 positive regulation of cell motility
IMP
Inferred from Mutant Phenotype
Term mapped from: Pseudocap:PA5387
 ECO:0000315
mutant phenotype evidence used in manual assertion		 19592586 Reviewed by curator
Biological Process GO:2000147 positive regulation of cell motility
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 19592586 Reviewed by curator
Biological Process GO:2000282 regulation of cellular amino acid biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: GB:J04155.1
 ECO:0000250
sequence similarity evidence used in manual assertion		 19592586 Reviewed by curator
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd08441
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 4 62 9.6E-18
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 19 30 4.3E-9
CDD cd08441 PBP2_MetR IPR037406 HTH-type transcriptional regulator MetR, PBP2 domain 93 290 6.5712E-120
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 1 112 8.84E-22
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 87 2.8E-22
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 88 287 5.58E-36
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 40 51 4.3E-9
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 30 40 4.3E-9
PANTHER PTHR30126 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 1 292 9.8E-64
Gene3D G3DSA:3.40.190.10 - - - 163 267 1.2E-38
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 88 287 1.7E-38
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 1 85 3.7E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.