Pseudomonas aeruginosa UCBPP-PA14, PA14_18110 (mmsR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd06986 cupin_MmsR-like_N - - 41 127 1.9728E-24
Gene3D G3DSA:1.10.10.60 - - - 202 245 6.8E-8
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 251 301 1.93E-12
Gene3D G3DSA:2.60.120.280 Regulatory protein AraC - - 47 187 1.0E-9
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 47 184 7.2E-28
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 214 297 8.7E-25
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 203 246 1.16E-6
Gene3D G3DSA:1.10.10.60 - - - 246 302 2.8E-15
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 281 297 2.7E-5
PANTHER PTHR46796 HTH-TYPE TRANSCRIPTIONAL ACTIVATOR RHAS-RELATED - - 50 301 9.8E-27
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 220 299 9.0E-16
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 266 281 2.7E-5
SUPERFAMILY SSF51215 Regulatory protein AraC IPR037923 Transcription regulator HTH-like 36 187 4.97E-32

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.