Pseudomonas aeruginosa UCBPP-PA14, PA14_18350

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016831 carboxy-lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd05257
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50486
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009058 biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02911
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016742 hydroxymethyl-, formyl- and related transferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF036506
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Adaptation, Protection Other UCBPP-PA14 genes in this class
Cell wall / LPS / capsule Other UCBPP-PA14 genes in this class
Translation, post-translational modification, degradation Other UCBPP-PA14 genes in this class
Antibiotic resistance and susceptibility Other UCBPP-PA14 genes in this class
Putative enzymes Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau00520 Amino sugar and nucleotide sugar metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau01503 Cationic antimicrobial peptide (CAMP) resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_01166 Bifunctional polymyxin resistance protein ArnA [arnA]. IPR021168 Bifunctional polymyxin resistance protein, ArnA 3 661 61.345776
PIRSF PIRSF036506 MtRNA_frt_NDPSE IPR021168 Bifunctional polymyxin resistance protein, ArnA 3 661 0.0
PANTHER PTHR43245 BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA - - 319 651 6.4E-85
Pfam PF00551 Formyl transferase IPR002376 Formyl transferase, N-terminal 28 175 5.8E-26
CDD cd05257 Arna_like_SDR_e IPR045869 Bifunctional polymyxin resistance protein ArnA-like, extended (e) SDRs 319 650 7.8174E-118
Pfam PF01370 NAD dependent epimerase/dehydratase family IPR001509 NAD-dependent epimerase/dehydratase 320 567 5.1E-44
SUPERFAMILY SSF50486 FMT C-terminal domain-like IPR011034 Formyl transferase-like, C-terminal domain superfamily 207 300 6.75E-21
Gene3D G3DSA:3.40.50.12230 - - - 4 295 2.4E-82
SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains IPR036291 NAD(P)-binding domain superfamily 319 652 3.72E-71
SUPERFAMILY SSF53328 Formyltransferase IPR036477 Formyl transferase, N-terminal domain superfamily 5 204 1.83E-54
CDD cd08702 Arna_FMT_C - - 206 295 1.9047E-32
Gene3D G3DSA:3.40.50.720 - - - 316 659 3.5E-120
Pfam PF02911 Formyl transferase, C-terminal domain IPR005793 Formyl transferase, C-terminal 204 280 4.9E-16
FunFam G3DSA:3.40.50.720:FF:000197 Bifunctional polymyxin resistance protein ArnA - - 316 660 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.