Pseudomonas aeruginosa UCBPP-PA14, PA14_18500 (algG)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0042121 alginic acid biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3545
 ECO:0000249
sequence similarity evidence used in automatic assertion		 12581364
Biological Process GO:0050896 response to stimulus
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3545
 ECO:0000249
sequence similarity evidence used in automatic assertion		 8144447
Biological Process GO:0042121 alginic acid biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3545
 ECO:0000249
sequence similarity evidence used in automatic assertion		 8144447

Functional Classifications Manually Assigned by PseudoCAP

Secreted Factors (toxins, enzymes, alginate) Other UCBPP-PA14 genes in this class
Cell wall / LPS / capsule Other UCBPP-PA14 genes in this class
Adaptation, Protection Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau00051 Fructose and mannose metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR03804 JCVI: parallel beta-helix repeat (two copies) IPR022441 Parallel beta-helix repeat-2 395 437 2.7E-6
SMART SM00710 pbh1 IPR006626 Parallel beta-helix repeat 401 423 7.2
Gene3D G3DSA:2.160.20.10 - IPR012334 Pectin lyase fold 76 499 0.0
SMART SM00710 pbh1 IPR006626 Parallel beta-helix repeat 354 376 2200.0
SMART SM00710 pbh1 IPR006626 Parallel beta-helix repeat 378 400 110.0
SMART SM00710 pbh1 IPR006626 Parallel beta-helix repeat 243 270 220.0
SMART SM00710 pbh1 IPR006626 Parallel beta-helix repeat 329 352 15.0
SUPERFAMILY SSF51126 Pectin lyase-like IPR011050 Pectin lyase fold/virulence factor 164 465 4.71E-38
SMART SM00722 complete IPR006633 Carbohydrate-binding/sugar hydrolysis domain 262 422 9.3E-20
Pfam PF05048 Periplasmic copper-binding protein (NosD) IPR007742 Periplasmic copper-binding protein NosD, beta helix domain 288 438 1.7E-16
SMART SM00710 pbh1 IPR006626 Parallel beta-helix repeat 305 327 81.0
SMART SM00710 pbh1 IPR006626 Parallel beta-helix repeat 283 304 2200.0
NCBIfam NF038177 NCBIFAM: mannuronan 5-epimerase AlgG - - 20 543 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.