Pseudomonas aeruginosa UCBPP-PA14, PA14_19120 (rhlR)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF46894	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:cd06170	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pau02025	Biofilm formation - Pseudomonas aeruginosa	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pau02024	Quorum sensing	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	195	211	2.1E-11
PANTHER	PTHR44688	-	-	-	29	240	2.3E-19
Pfam	PF03472	Autoinducer binding domain	IPR005143	Transcription factor LuxR-like, autoinducer-binding domain	26	164	8.3E-36
Gene3D	G3DSA:1.10.10.10	-	IPR036388	Winged helix-like DNA-binding domain superfamily	180	241	4.2E-20
SUPERFAMILY	SSF75516	Pheromone-binding domain of LuxR-like quorum-sensing transcription factors	IPR036693	Transcription factor LuxR-like, autoinducer-binding domain superfamily	9	172	3.79E-39
FunFam	G3DSA:1.10.10.10:FF:000297	DNA-binding transcriptional activator SdiA	-	-	178	241	3.8E-35
Gene3D	G3DSA:3.30.450.80	-	IPR036693	Transcription factor LuxR-like, autoinducer-binding domain superfamily	3	177	7.9E-47
Pfam	PF00196	Bacterial regulatory proteins, luxR family	IPR000792	Transcription regulator LuxR, C-terminal	181	235	2.0E-19
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	211	223	2.1E-11
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	181	195	2.1E-11
SUPERFAMILY	SSF46894	C-terminal effector domain of the bipartite response regulators	IPR016032	Signal transduction response regulator, C-terminal effector	171	241	3.74E-18
CDD	cd06170	LuxR_C_like	IPR000792	Transcription regulator LuxR, C-terminal	181	229	2.72453E-18
SMART	SM00421	luxrmega5	IPR000792	Transcription regulator LuxR, C-terminal	178	235	8.9E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.