Pseudomonas aeruginosa UCBPP-PA14, PA14_19800

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.60 - - - 136 188 2.9E-6
Gene3D G3DSA:3.10.450.50 - - - 1 108 2.1E-14
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 162 242 3.6E-19
Gene3D G3DSA:1.10.10.60 - - - 189 245 8.6E-15
Pfam PF12680 SnoaL-like domain IPR037401 SnoaL-like domain 6 100 4.1E-10
SUPERFAMILY SSF54427 NTF2-like IPR032710 NTF2-like domain superfamily 2 107 1.26E-16
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 156 240 1.3E-18
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 208 242 6.72E-8
PANTHER PTHR43280 ARAC-FAMILY TRANSCRIPTIONAL REGULATOR - - 152 244 6.9E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.