Pseudomonas aeruginosa UCBPP-PA14, PA14_20890 (rfaD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0050661 NADP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01601
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0005975 carbohydrate metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01601
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008712 ADP-glyceromanno-heptose 6-epimerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01601
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Cell wall / LPS / capsule Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau00540 Lipopolysaccharide biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR02197 JCVI: ADP-glyceromanno-heptose 6-epimerase IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase 5 330 2.0E-130
CDD cd05248 ADP_GME_SDR_e IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase 5 328 0.0
SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains IPR036291 NAD(P)-binding domain superfamily 1 328 5.45E-57
Gene3D G3DSA:3.40.50.720 - - - 6 324 2.1E-128
Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase 4 331 48.013237
PANTHER PTHR43103 NUCLEOSIDE-DIPHOSPHATE-SUGAR EPIMERASE - - 3 330 7.2E-54
Gene3D G3DSA:3.90.25.10 - - - 169 311 2.1E-128
Pfam PF01370 NAD dependent epimerase/dehydratase family IPR001509 NAD-dependent epimerase/dehydratase 5 243 2.5E-41

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.