Pseudomonas aeruginosa UCBPP-PA14, PA14_23110

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016866 intramolecular transferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00093
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00363
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction - - 260 386 -
SUPERFAMILY SSF55120 Pseudouridine synthase IPR020103 Pseudouridine synthase, catalytic domain superfamily 77 247 2.28E-42
MobiDBLite mobidb-lite consensus disorder prediction - - 267 307 -
FunFam G3DSA:3.30.70.580:FF:000009 Pseudouridine synthase - - 79 161 1.8E-35
SMART SM00363 s4_6 IPR002942 RNA-binding S4 domain 14 76 1.0E-7
CDD cd02556 PseudoU_synth_RluB - - 77 244 1.36442E-84
CDD cd00165 S4 - - 16 82 1.49018E-9
NCBIfam TIGR00093 JCVI: pseudouridine synthase IPR000748 Pseudouridine synthase, RsuA/RluB/E/F 82 244 3.3E-53
Gene3D G3DSA:3.30.70.580 - IPR020094 Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal 79 247 2.1E-49
FunFam G3DSA:3.30.70.1560:FF:000001 Pseudouridine synthase - - 145 229 1.2E-27
Pfam PF01479 S4 domain IPR002942 RNA-binding S4 domain 15 59 1.6E-9
FunFam G3DSA:3.10.290.10:FF:000003 Pseudouridine synthase - - 11 69 1.1E-20
MobiDBLite mobidb-lite consensus disorder prediction - - 371 386 -
Gene3D G3DSA:3.10.290.10 - IPR036986 RNA-binding S4 domain superfamily 12 69 1.9E-20
Gene3D G3DSA:3.30.70.1560 - IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain 145 229 2.1E-49
SUPERFAMILY SSF55174 Alpha-L RNA-binding motif - - 13 106 5.05E-14
Pfam PF00849 RNA pseudouridylate synthase IPR006145 Pseudouridine synthase, RsuA/RluA-like 78 209 6.1E-15
PANTHER PTHR47683 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED - - 13 281 1.2E-89
MobiDBLite mobidb-lite consensus disorder prediction - - 320 359 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.