Pseudomonas aeruginosa UCBPP-PA14, PA14_23190

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09339
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09339
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00346 iclrneu IPR005471 Transcription regulator IclR, N-terminal 8 94 3.3E-7
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 7 74 3.41E-11
Pfam PF09339 IclR helix-turn-helix domain IPR005471 Transcription regulator IclR, N-terminal 8 55 2.0E-10
Coils Coil Coil - - 159 179 -
SUPERFAMILY SSF55781 GAF domain-like - - 62 241 2.09E-38
Pfam PF01614 Bacterial transcriptional regulator IPR014757 Transcription regulator IclR, C-terminal 127 238 6.6E-16
PANTHER PTHR30136 HELIX-TURN-HELIX TRANSCRIPTIONAL REGULATOR, ICLR FAMILY - - 7 241 2.0E-45
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 74 236 3.1E-38
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 2 73 3.8E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.