Pseudomonas aeruginosa UCBPP-PA14, PA14_23540 (act)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 89 287 1.26E-47
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 1 84 7.1E-27
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 3 290 8.5E-89
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 88 1.0E-24
FunFam G3DSA:3.40.190.290:FF:000032 Probable transcriptional regulator - - 89 285 0.0
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 7 62 5.9E-19
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 29 39 4.9E-5
Gene3D G3DSA:3.40.190.290 - - - 89 285 2.8E-62
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 87 285 5.2E-45
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 18 29 4.9E-5
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 1 87 1.33E-23
CDD cd08422 PBP2_CrgA_like - - 91 282 6.80973E-66
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 39 50 4.9E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.