Pseudomonas aeruginosa UCBPP-PA14, PA14_33170

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.40.190.290:FF:000001 Transcriptional regulator, LysR family - - 89 295 8.5E-71
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 6 63 3.9E-18
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 90 297 2.33E-47
Gene3D G3DSA:3.40.190.290 - - - 88 295 1.7E-64
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 3 296 1.4E-81
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 2 86 6.8E-22
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 3 113 5.45E-22
FunFam G3DSA:1.10.10.10:FF:000396 LysR family transcriptional regulator - - 3 87 4.1E-40
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 90 296 2.0E-46
CDD cd08422 PBP2_CrgA_like - - 93 292 3.06046E-79

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.