Pseudomonas aeruginosa UCBPP-PA14, PA14_41020

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006520 cellular amino acid metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR45229
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55904
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016831 carboxy-lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR45229
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR45229
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Amino acid biosynthesis and metabolism Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau00330 Arginine and proline metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain IPR008286 Orn/Lys/Arg decarboxylase, C-terminal 607 736 7.6E-49
SUPERFAMILY SSF55904 Ornithine decarboxylase C-terminal domain IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily 602 751 1.24E-43
Gene3D G3DSA:3.40.50.2300 - - - 8 148 2.7E-31
PIRSF PIRSF009393 Orn_decarb IPR011193 Ornithine/lysine/arginine decarboxylase 3 751 0.0
Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase, domain 1 IPR015422 Pyridoxal phosphate-dependent transferase, small domain 455 627 1.4E-64
SUPERFAMILY SSF53383 PLP-dependent transferases IPR015424 Pyridoxal phosphate-dependent transferase 149 599 5.39E-113
Gene3D G3DSA:3.90.100.10 - - - 628 751 1.7E-43
Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain IPR005308 Orn/Lys/Arg decarboxylase, N-terminal 22 143 6.0E-24
PANTHER PTHR45229 CONSTITUTIVE ORNITHINE DECARBOXYLASE IPR011193 Ornithine/lysine/arginine decarboxylase 10 744 0.0
Gene3D G3DSA:3.40.640.10 - IPR015421 Pyridoxal phosphate-dependent transferase, major domain 149 454 2.1E-100
Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain IPR000310 Orn/Lys/Arg decarboxylase, major domain 149 582 0.0
FunFam G3DSA:3.40.640.10:FF:000008 Lysine decarboxylase, inducible - - 149 454 5.1E-125
CDD cd00615 Orn_deC_like IPR000310 Orn/Lys/Arg decarboxylase, major domain 150 469 2.08197E-123

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.