Pseudomonas aeruginosa PA7, PSPA7_1414 (txcS )

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0015627 type II protein secretion system complex
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 24748613 Reviewed by curator
Cellular Component GO:0015627 type II protein secretion system complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015628 protein secretion by the type II secretion system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pap03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00812 Bacterial general secretion pathway protein F signature IPR003004 GspF/PilC family 369 383 8.4E-33
PRINTS PR00812 Bacterial general secretion pathway protein F signature IPR003004 GspF/PilC family 385 404 8.4E-33
PRINTS PR00812 Bacterial general secretion pathway protein F signature IPR003004 GspF/PilC family 166 194 8.4E-33
PRINTS PR00812 Bacterial general secretion pathway protein F signature IPR003004 GspF/PilC family 67 79 8.4E-33
PANTHER PTHR30012 GENERAL SECRETION PATHWAY PROTEIN IPR003004 GspF/PilC family 1 404 1.8E-112
FunFam G3DSA:1.20.81.30:FF:000001 Type II secretion system protein F - - 58 173 2.2E-32
NCBIfam TIGR02120 JCVI: type II secretion system inner membrane protein GspF IPR011850 Type II secretion system protein GspF 4 404 0.0
Gene3D G3DSA:1.20.81.30 Type II secretion system (T2SS), domain F IPR042094 Type II secretion system GspF domain superfamily 257 369 5.6E-29
Pfam PF00482 Type II secretion system (T2SS), protein F IPR018076 Type II secretion system protein GspF domain 72 194 5.0E-25
Pfam PF00482 Type II secretion system (T2SS), protein F IPR018076 Type II secretion system protein GspF domain 274 396 5.2E-29
Gene3D G3DSA:1.20.81.30 Type II secretion system (T2SS), domain F IPR042094 Type II secretion system GspF domain superfamily 59 173 1.4E-23
FunFam G3DSA:1.20.81.30:FF:000001 Type II secretion system protein F - - 258 372 6.5E-31

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.