Pseudomonas syringae pv. tomato DC3000, PSPTO_2720 (nudC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0045454 cell redox homeostasis
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 24989777 Reviewed by curator
Molecular Function GO:0016787 hydrolase activity
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 24989777 Reviewed by curator
Molecular Function GO:0016787 hydrolase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09297
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000210 NAD+ diphosphatase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00297
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046872 metal ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09297
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pst00760 Nicotinate and nicotinamide metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pst01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR42904 NUDIX HYDROLASE, NUDC SUBFAMILY - - 79 268 6.2E-53
Pfam PF09297 NADH pyrophosphatase zinc ribbon domain IPR015376 Zinc ribbon, NADH pyrophosphatase 109 140 1.3E-10
CDD cd03429 NADH_pyrophosphatase - - 145 267 1.48057E-69
Pfam PF00293 NUDIX domain IPR000086 NUDIX hydrolase domain 146 257 7.9E-19
Hamap MF_00297 NAD-capped RNA hydrolase NudC [nudC]. IPR022925 NAD-capped RNA hydrolase NudC 8 273 49.640221
Gene3D G3DSA:3.90.79.10 Nucleoside Triphosphate Pyrophosphohydrolase - - 142 271 4.0E-39
Gene3D G3DSA:3.90.79.20 - - - 4 141 3.0E-25
SUPERFAMILY SSF55811 Nudix IPR015797 NUDIX hydrolase-like domain superfamily 95 261 1.12E-42
Pfam PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain IPR015375 NADH pyrophosphatase-like, N-terminal 23 107 2.6E-5
SUPERFAMILY SSF55811 Nudix IPR015797 NUDIX hydrolase-like domain superfamily 7 112 3.12E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.