Pseudomonas aeruginosa LESB58, PALES_12231 (nagR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009893 positive regulation of metabolic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3757
 ECO:0000249
sequence similarity evidence used in automatic assertion		 21169497
Molecular Function GO:0000976 transcription regulatory region sequence-specific DNA binding
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3757
 ECO:0000249
sequence similarity evidence used in automatic assertion		 21169497
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07702
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd07377
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd07377
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other LESB58 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00345 gntr3 IPR000524 Transcription regulator HTH, GntR 25 84 5.8E-16
CDD cd07377 WHTH_GntR IPR000524 Transcription regulator HTH, GntR 20 85 5.73083E-21
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 16 87 1.13E-20
Pfam PF07702 UTRA domain IPR011663 UbiC transcription regulator-associated 106 240 7.0E-34
PRINTS PR00035 GntR bacterial regulatory protein HTH signature IPR000524 Transcription regulator HTH, GntR 58 74 2.9E-9
PANTHER PTHR44846 MANNOSYL-D-GLYCERATE TRANSPORT/METABOLISM SYSTEM REPRESSOR MNGR-RELATED - - 15 246 5.2E-56
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 13 85 4.8E-23
Gene3D G3DSA:3.40.1410.10 - IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily 88 247 2.4E-39
PRINTS PR00035 GntR bacterial regulatory protein HTH signature IPR000524 Transcription regulator HTH, GntR 44 58 2.9E-9
Pfam PF00392 Bacterial regulatory proteins, gntR family IPR000524 Transcription regulator HTH, GntR 21 84 1.0E-16
SMART SM00866 UTRA_2 IPR011663 UbiC transcription regulator-associated 104 240 2.1E-33
SUPERFAMILY SSF64288 Chorismate lyase-like IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily 72 247 4.4E-44

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.