Pseudomonas putida KT2440, PP_3106 (vgrG1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Protein secretion/export apparatus Other KT2440 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppu03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR32305 - - - 62 541 1.3E-56
SUPERFAMILY SSF69349 Phage fibre proteins - - 454 603 5.81E-35
Gene3D G3DSA:3.55.50.10 - - - 107 199 6.2E-104
NCBIfam TIGR03361 JCVI: type VI secretion system tip protein TssI/VgrG N-terminal domain IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset 21 535 0.0
SUPERFAMILY SSF69279 Phage tail proteins - - 24 195 1.4E-54
Pfam PF06715 Gp5 C-terminal repeat (3 copies) IPR010609 Gp5, C-terminal 525 547 1.7E-5
Gene3D G3DSA:2.30.110.50 - - - 28 346 6.2E-104
Gene3D G3DSA:4.10.220.110 - - - 233 298 6.2E-104
Pfam PF04717 Type VI secretion system/phage-baseplate injector OB domain IPR006531 Gp5/Type VI secretion system Vgr protein, OB-fold domain 398 465 5.9E-15
Pfam PF05954 Phage tail baseplate hub (GPD) - - 38 346 5.4E-97
SUPERFAMILY SSF69255 gp5 N-terminal domain-like - - 376 464 9.02E-32
SUPERFAMILY SSF69279 Phage tail proteins - - 201 376 6.97E-35
Gene3D G3DSA:2.40.50.230 - IPR037026 Vgr protein, OB-fold domain superfamily 367 468 7.6E-41
NCBIfam TIGR01646 JCVI: type VI secretion system tip protein VgrG IPR006533 Type VI secretion system, RhsGE-associated Vgr protein 32 517 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.