Pseudomonas aeruginosa PAO1, PA2588

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA2588
Name
Replicon chromosome
Genomic location 2928539 - 2929567 (+ strand)
Transposon Mutants 2 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_251278.1
GI 15597784
Affymetrix PA2588_at
Entrez 879541
GenBank AAG05976.1
INSDC AAG05976.1
NCBI Locus Tag PA2588
protein_id(GenBank) gb|AAG05976.1|AE004687_5|gnl|PseudoCAP|PA2588
TIGR NTL03PA02588
UniParc UPI00000C5754
UniProtKB Acc Q9I0P9
UniProtKB ID Q9I0P9_PSEAE
UniRef100 UniRef100_W0YRN5
UniRef50 UniRef50_V6AE53
UniRef90 UniRef90_V6AE53

Product

Feature Type CDS
Coding Frame 1
Product Name
probable transcriptional regulator
Product Name Confidence: Class 3
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 3.91
Kyte-Doolittle Hydrophobicity Value -0.417
Molecular Weight (kDa) 39.1
Isoelectric Point (pI) 8.89

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
5CHH TRANSCRIPTION 07/10/15 Crystal structure of transcriptional regulator CdpR from Pseudomonas aeruginosa Pseudomonas aeruginosa 1.85 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 186 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002959 (302 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA2588

Human Homologs

References

No references are associated with this feature.