Pseudomonas aeruginosa PAO1, PA3388

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA3388
Name
Synonym: yaeB
Replicon chromosome
Genomic location 3793113 - 3793808 (+ strand)
Transposon Mutants 2 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_252078.1
GI 15598584
Affymetrix PA3388_at
DNASU PaCD00007488
Entrez 880034
GenBank AAG06776.1
INSDC AAG06776.1
NCBI Locus Tag PA3388
protein_id(GenBank) gb|AAG06776.1|AE004760_4|gnl|PseudoCAP|PA3388
TIGR NTL03PA03388
UniParc UPI0000133467
UniProtKB Acc Q9RPT0
UniProtKB ID RCSF1_PSEAE
UniRef100 UniRef100_Q9RPT0
UniRef50 UniRef50_Q9RPT0
UniRef90 UniRef90_Q9RPT0

Product

Feature Type CDS
Coding Frame 1
Product Name
conserved hypothetical protein
Product Name Confidence: Class 4
Synonyms
Evidence for Translation
Charge (pH 7) 0.86
Kyte-Doolittle Hydrophobicity Value -0.321
Molecular Weight (kDa) 25.9
Isoelectric Point (pI) 7.27

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7BTU TRANSFERASE 04/03/20 Crystal structure of TrmO from P. areuginosa Pseudomonas aeruginosa 1.91 X-RAY DIFFRACTION 100.0
7BU1 TRANSFERASE 04/03/20 Crystal structure of TrmO from Pseudomonas aeruginosa Pseudomonas aeruginosa 2.49 X-RAY DIFFRACTION 100.0
7BTZ TRANSFERASE 04/03/20 Crystal structure of TrmO Pseudomonas aeruginosa 2.4 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 243 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002240 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3388

Human Homologs

Ensembl 110, assembly GRCh38.p14
tRNA methyltransferase O [Source:HGNC Symbol;Acc:HGNC:30967]
E-value: 6.6e-31
Percent Identity: 46.9

References

No references are associated with this feature.