Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA4247
|
Name |
rplR
|
Replicon | chromosome |
Genomic location | 4759574 - 4759924 (- strand) |
RefSeq | NP_252937.1 |
GI | 15599443 |
Affymetrix | PA4247_rplR_at |
DNASU | PaCD00007843 |
Entrez | 881795 |
GenBank | AAG07635.1 |
INSDC | AAG07635.1 |
NCBI Locus Tag | PA4247 |
protein_id(GenBank) | gb|AAG07635.1|AE004841_13|gnl|PseudoCAP|PA4247 |
TIGR | NTL03PA04248 |
UniParc | UPI00000C5C83 |
UniProtKB Acc | Q9HWF1 |
UniProtKB ID | RL18_PSEAE |
UniRef100 | UniRef100_A6UZK4 |
UniRef50 | UniRef50_Q9RSL2 |
UniRef90 | UniRef90_C1DKM9 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
50S ribosomal protein L18
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | 11.44 |
Kyte-Doolittle Hydrophobicity Value | -0.384 |
Molecular Weight (kDa) | 12.7 |
Isoelectric Point (pI) | 10.90 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 100.0 |
6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 100.0 |
6SPF | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.89 | ELECTRON MICROSCOPY | 100.0 |
7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 100.0 |
6SPD | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 50s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.28 | ELECTRON MICROSCOPY | 100.0 |
7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
6SPB | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6 | Pseudomonas aeruginosa | 2.82 | ELECTRON MICROSCOPY | 100.0 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 590 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG001463 (535 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA4247
Search term: rplR
Search term: 50S ribosomal protein L18
|
The primary structure of the 5S RNA binding protein L18 from Escherichia coli ribosomes.
Brosius J, Schiltz E, Chen R
FEBS Lett 1975 Aug 15;56(2):359-61
PubMed ID: 1098937
|
The spc ribosomal protein operon of Escherichia coli: sequence and cotranscription of the ribosomal protein genes and a protein export gene.
Cerretti DP, Dean D, Davis GR, Bedwell DM, Nomura M
Nucleic Acids Res 1983 May 11;11(9):2599-616
PubMed ID: 6222285
|
Protein L18 binds primarily at the junctions of helix II and internal loops A and B in Escherichia coli 5 S RNA. Implications for 5 S RNA structure.
Egebjerg J, Christiansen J, Brown RS, Larsen N, Garrett RA
J Mol Biol 1989 Apr 20;206(4):651-68
PubMed ID: 2472486
|