Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA4208
|
Name |
opmD
|
Replicon | chromosome |
Genomic location | 4710621 - 4712084 (+ strand) |
Transposon Mutants | 2 transposon mutants in PAO1 |
Transposon Mutants in orthologs | 1 transposon mutants in orthologs |
RefSeq | NP_252897.1 |
GI | 15599403 |
Affymetrix | PA4208_at |
Entrez | 880347 |
GenBank | AAG07595.1 |
INSDC | AAG07595.1 |
NCBI Locus Tag | PA4208 |
protein_id(GenBank) | gb|AAG07595.1|AE004837_6|gnl|PseudoCAP|PA4208 |
TIGR | NTL03PA04208 |
UniParc | UPI0000001FD9 |
UniProtKB Acc | Q9HWH3 |
UniProtKB ID | Q9HWH3_PSEAE |
UniRef100 | UniRef100_G3XCL5 |
UniRef50 | UniRef50_Q02T25 |
UniRef90 | UniRef90_Q02T25 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
probable outer membrane protein precursor
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | -4.04 |
Kyte-Doolittle Hydrophobicity Value | -0.282 |
Molecular Weight (kDa) | 53.0 |
Isoelectric Point (pI) | 5.62 |
Individual Mappings | |
Additional evidence for subcellular localization |
Identified using the Resistance Gene Identifier (RGI)
Model Name | Definition | Accession | Model Type (?) | SNP | Cutoff | Bit Score | Percent Identity | CARD Version |
OpmD | OpmD is the outer membrane channel protein of the efflux complex MexGHI-OpmD. [PMID:12937010, PMID:12917802, PMID:15817779, PMID:12177331] | ARO:3000809 | protein homolog model | Perfect | 932.9 | 100.0 | 3.2.5 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 289 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG001499 (305 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA4208
Search term: opmD
Search term: probable outer membrane protein precursor
|
Characterization of a new efflux pump, MexGHI-OpmD, from Pseudomonas aeruginosa that confers resistance to vanadium.
Aendekerk S, Ghysels B, Cornelis P, Baysse C
Microbiology (Reading) 2002 Aug;148(Pt 8):2371-2381
PubMed ID: 12177331
|
Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.
Lewenza S, Gardy JL, Brinkman FS, Hancock RE
Genome Res 2005 Feb;15(2):321-9
PubMed ID: 15687295
|
Characterization of MexE-MexF-OprN, a positively regulated multidrug efflux system of Pseudomonas aeruginosa.
Köhler T, Michéa-Hamzehpour M, Henze U, Gotoh N, Curty LK, Pechère JC
Mol Microbiol 1997 Jan;23(2):345-54
PubMed ID: 9044268
|