Pseudomonas aeruginosa PAO1, PA4389

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA4389
Name
Replicon chromosome
Genomic location 4919042 - 4919800 (+ strand)
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_253079.1
GI 15599585
Affymetrix PA4389_at
DNASU PaCD00007901
Entrez 881338
GenBank AAG07777.1
INSDC AAG07777.1
NCBI Locus Tag PA4389
protein_id(GenBank) gb|AAG07777.1|AE004854_13|gnl|PseudoCAP|PA4389
TIGR NTL03PA04390
UniParc UPI00000C5CF6
UniProtKB Acc Q9HW15
UniProtKB ID Q9HW15_PSEAE
UniRef100 UniRef100_W0YXD4
UniRef50 UniRef50_V6AKS0
UniRef90 UniRef90_V6AKS0

Product

Feature Type CDS
Coding Frame 1
Product Name
3-oxacyl-acyl carrier protein reductase
Product Name Confidence: Class 1
Synonyms probable short-chain dehydrogenase
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 0.36
Kyte-Doolittle Hydrophobicity Value 0.106
Molecular Weight (kDa) 26.7
Isoelectric Point (pI) 7.29

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Cytoplasmic Class 2
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 652 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003017 (954 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA4389

Human Homologs

References

Identification of the putrescine biosynthetic genes in Pseudomonas aeruginosa and characterization of agmatine deiminase and N-carbamoylputrescine amidohydrolase of the arginine decarboxylase pathway.
Nakada Y, Itoh Y
Microbiology (Reading) 2003 Mar;149(Pt 3):707-714
PubMed ID: 12634339
Characterization of 3-Oxacyl-Acyl Carrier Protein Reductase Homolog Genes in Pseudomonas aeruginosa PAO1.
Guo QQ, Zhang WB, Zhang C, Song YL, Liao YL, Ma JC, Yu YH, Wang HH
Front Microbiol 2019;10:1028
PubMed ID: 31231314