Pseudomonas aeruginosa PAO1, PA5000 (wapR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA5000
Name
wapR
Replicon chromosome
Genomic location 5617534 - 5618418 (- strand)
Transposon Mutants in orthologs 7 transposon mutants in orthologs

Cross-References

RefSeq NP_253687.1
GI 15600193
Affymetrix PA5000_at
Entrez 881662
GenBank AAG08385.1
INSDC AAG08385.1
NCBI Locus Tag PA5000
protein_id(GenBank) gb|AAG08385.1|AE004912_11|gnl|PseudoCAP|PA5000
TIGR NTL03PA05001
UniParc UPI00000C5EBD
UniProtKB Acc Q9HUG5
UniProtKB ID Q9HUG5_PSEAE
UniRef100 UniRef100_Q9HUG5
UniRef50 UniRef50_Q9HUG5
UniRef90 UniRef90_Q9HUG5

Product

Feature Type CDS
Coding Frame 1
Product Name
alpha-1,3-rhamnosyltransferase WapR
Product Name Confidence: Class 1
Synonyms
Evidence for Translation
Charge (pH 7) 0.90
Kyte-Doolittle Hydrophobicity Value -0.319
Molecular Weight (kDa) 33.6
Isoelectric Point (pI) 7.56

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 568 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000682 (2121 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA5000
Search term: wapR

Human Homologs

References

Functional characterization of MigA and WapR: putative rhamnosyltransferases involved in outer core oligosaccharide biosynthesis of Pseudomonas aeruginosa.
Poon KK, Westman EL, Vinogradov E, Jin S, Lam JS
J Bacteriol 2008 Mar;190(6):1857-65
PubMed ID: 18178733