Pseudomonas aeruginosa PAO1, PA0296 (spuI)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| -35 region | 334666 | 334671 | + |
|
Details | |
| -10 region | 334689 | 334694 | + |
|
Details | |
| transcriptional initiation site (+1) | 334700 | 334700 | + |
|
Details | |
| transcriptional initiation site (+1) | 334499 | 334499 | - |
|
Details | |
| -10 region | 334508 | 334513 | - |
|
Details | |
| -35 region | 334531 | 334536 | - |
|
Details | |
| transcription initiation site | 334700 | 334700 | + |
|
12081945 | Details |
| -10 element (sigma 70) | 334689 | 334694 | + |
|
12081945 | Details |
| -35 element (sigma 70) | 334666 | 334671 | + |
|
12081945 | Details |
| transcription initiation site | 334499 | 334499 | - |
|
12081945 | Details |
| -10 element (sigma 70) | 334508 | 334513 | - |
|
12081945 | Details |
| -35 element (sigma 70) | 334531 | 334536 | - |
|
12081945 | Details |
| Shine-Dalgarno sequence | 334465 | 334467 | - |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CCGGGGCGGTTTC-N33-GAAACCGCCCCGG | 332969 | 333027 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Rho-independent transcription terminator TERM 63 | 332969 | 333027 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Shine-Dalgarno sequence | 332832 | 332834 | - |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |