Pseudomonas aeruginosa PAO1, PA0399
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pae00270 | Cysteine and methionine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pae01230 | Biosynthesis of amino acids | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| PseudoCAP | Cysteine metabolism |
ECO:0000037
not_recorded |
|||
| PseudoCyc | HOMOCYSDEGR-PWY | L-cysteine biosynthesis III (from L-homocysteine) | 19.5 |
ECO:0000250
sequence similarity evidence used in manual assertion |
12867747 |
| PseudoCyc | PWY-801 | L-homocysteine and L-cysteine interconversion | 19.5 |
ECO:0000250
sequence similarity evidence used in manual assertion |
12867747 |
| PseudoCyc | PWY-821 | superpathway of sulfur amino acid biosynthesis (Saccharomyces cerevisiae) | 19.5 |
ECO:0000250
sequence similarity evidence used in manual assertion |
12867747 |
| KEGG | pae01130 | Biosynthesis of antibiotics | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pae01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pae00260 | Glycine, serine and threonine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| PseudoCAP | Glycine, serine and threonine metabolism |
ECO:0000037
not_recorded |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PANTHER | PTHR10314 | CYSTATHIONINE BETA-SYNTHASE | - | - | 8 | 318 | 1.7E-94 |
| SMART | SM00116 | cbs_1 | IPR000644 | CBS domain | 344 | 391 | 1.8E-7 |
| Gene3D | G3DSA:3.40.50.1100 | - | IPR036052 | Tryptophan synthase beta chain-like, PALP domain superfamily | 13 | 309 | 1.2E-108 |
| SUPERFAMILY | SSF54631 | CBS-domain pair | IPR046342 | CBS domain superfamily | 334 | 453 | 8.09E-18 |
| Gene3D | G3DSA:3.10.580.10 | - | IPR046342 | CBS domain superfamily | 316 | 457 | 1.1E-15 |
| Gene3D | G3DSA:3.40.50.1100 | - | IPR036052 | Tryptophan synthase beta chain-like, PALP domain superfamily | 42 | 155 | 1.2E-108 |
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | IPR001926 | Tryptophan synthase beta chain-like, PALP domain | 11 | 303 | 1.4E-64 |
| CDD | cd04608 | CBS_pair_CBS | IPR046353 | Cystathionine beta-synthase, C-terminal domain | 334 | 451 | 1.34211E-42 |
| FunFam | G3DSA:3.40.50.1100:FF:000003 | Cystathionine beta-synthase | - | - | 42 | 155 | 1.9E-44 |
| CDD | cd01561 | CBS_like | - | - | 14 | 310 | 0.0 |
| Pfam | PF00571 | CBS domain | IPR000644 | CBS domain | 344 | 387 | 1.1E-9 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | IPR036052 | Tryptophan synthase beta chain-like, PALP domain superfamily | 6 | 321 | 7.2E-93 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.