Pseudomonas aeruginosa PAO1, PA0428

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0044010	single-species biofilm formation	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	17158671	Reviewed by curator
Biological Process	GO:0071978	bacterial-type flagellum-dependent swarming motility	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	17158671	Reviewed by curator
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003676	nucleic acid binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0042255	ribosome assembly	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00968	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003724	RNA helicase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00968	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pae03018	RNA degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
FunFam	G3DSA:3.40.50.300:FF:000108	ATP-dependent RNA helicase RhlE	-	-	1	215	5.9E-91
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	386	639	-
Hamap	MF_00968	ATP-dependent RNA helicase RhlE [rhlE].	IPR028622	ATP-dependent RNA helicase RhlE	1	566	50.626034
FunFam	G3DSA:3.40.50.300:FF:000468	ATP-dependent RNA helicase RhlE	-	-	218	401	6.2E-94
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	80	365	3.4E-73
CDD	cd00268	DEADc	-	-	12	213	1.50766E-99
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	397	420	-
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	521	542	-
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	24	102	2.92E-5
SMART	SM00487	ultradead3	IPR014001	Helicase superfamily 1/2, ATP-binding domain	20	227	8.3E-62
Pfam	PF00271	Helicase conserved C-terminal domain	IPR001650	Helicase, C-terminal	241	344	3.2E-26
PANTHER	PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	-	-	2	572	0.0
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	605	639	-
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	1	215	6.6E-76
SMART	SM00490	helicmild6	IPR001650	Helicase, C-terminal	263	344	1.6E-32
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	467	482	-
Pfam	PF00270	DEAD/DEAH box helicase	IPR011545	DEAD/DEAH box helicase domain	25	199	4.1E-45
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	218	437	1.6E-50
CDD	cd18787	SF2_C_DEAD	-	-	224	353	5.56397E-60

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.